species:   Fugra
pid:       PID0948
parent:    FgmilR-7dps-14
paralog:   
locus:     NC_026474.1:8721057-8721143
matures:   ['UUGUGUCGUCACUGUCGCCAGCC', 'CUGUGAUCGACUACGACAAGC']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026474.1:8721057-8721143

6 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

   *******************************                 *********************************   
CUUGUUCAACUGUGAUCGACUACGACAAGCAAAAAAAAAAAAACAGUGACCAAGAGCUUGUGUCGUCACUGUCGCCAGCCAAACGAG
((((((...(((((((.(((.((.((((((.........................)))))))).)))...)))).)))...))))))
---------------------------------------------------------UUGUGUCGUCACUGUCGCCAGCC------- l=23 a=0 c
---------CUGUGAUCGACUACGACAAGC--------------------------------------------------------- l=21 a=0 c*
-----UCAACUGUGAUCGACUACGACAAGCAAAA----------------------------------------------------- l=29 a=2 ma
-----------------------------------------------------GAGCUUGUGUCGUCACUGUCGCCAGCCAAAC--- l=31 a=0 ma*

CUUGUUCAACUGUGAUCGACUACGA-------------------------------------------------------------- l=25 a=1 
-----UCAACUGUGAUCGACUACGACAAGCAAAA----------------------------------------------------- l=29 a=2 (ma)
--------------------------------------AAAAACAGUGACCAAGAGCUUGUG------------------------- l=24 a=1 
---------------------------------------------------AAGAGCUUGUGUCGUCACUGUCGCCA---------- l=26 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101100
fn-011
